These keto vanilla protein muffins are light, fluffy, and packed with wholesome ingredients—perfect for a healthy start to your day. Naturally gluten-free and low in carbs, they’re sweetened with keto-friendly sweeteners and contain a satisfying amount of protein to keep you full and energized.
Ready in just 30 minutes from start to finish, these muffins are ideal for busy mornings or as a grab-and-go snack. Whether you enjoy them for keto breakfast, post-workout fuel, or a guilt-free afternoon treat, these muffins deliver delicious flavor with every bite.

If you’re looking for a low-carb breakfast or a satisfying keto snack, these sugar-free vanilla protein muffins are exactly what you need. Pair them with a hot cup of coffee or tea in the morning for a delicious and energizing start to your day.
These keto muffins are loaded with vanilla flavor and sugar-free chocolate chips, making them perfect for meal prep. They’re an ideal grab-and-go snack or quick breakfast for busy days. Muffins are one of my favorite keto baking recipes because they’re simple, versatile, and loved by even the pickiest eaters. If you enjoy these, be sure to try my other favorites: Keto Pumpkin Cheesecake Muffins, Keto Cranberry Muffins, Keto Chocolate Muffins, and Keto Egg Muffins.
- 1 Why Youโll Love This Keto Vanilla Protein Muffins Recipe
- 2 Ingredients for Keto Vanilla Protein Muffins
- 3 How To Make Keto Vanilla Protein Muffins
- 4 Tips for Making the Best Keto Vanilla Protein Muffins
- 5 Mix-in Variations for Keto Vanilla Protein Muffins
- 6 Storing Ideas
- 7 Frequently Asked Questions
- 8 Keto Vanilla Protein Muffins
Why You’ll Love This Keto Vanilla Protein Muffins Recipe
- Make-ahead friendly – These keto vanilla protein muffins are perfect for meal prep and stay fresh for days.
- Quick & easy – Ready in just 30 minutes from start to finish.
- Naturally low-carb – Made with wholesome, low-carb ingredients that fit perfectly into a keto lifestyle.
- Customizable – Add chopped nuts, berries, or even a sprinkle of sugar-free cinnamon for your own twist.
- Diet-friendly – Completely sugar-free, gluten-free, and grain-free, making them great for multiple dietary needs.
- Perfect taste & texture – Soft, moist, and packed with sugar-free chocolate chips for a satisfying bite every time.
Ingredients for Keto Vanilla Protein Muffins
These keto vanilla protein muffins are made with a handful of simple, low-carb ingredients you probably already have in your kitchen:
- Almond Flour – Use superfine almond flour for the best soft and fluffy muffin texture.
- Protein Powder – I prefer unflavored protein powder, but you can use your favorite low-carb protein powder (just make sure it’s sugar-free).
- Eggs – Use room-temperature eggs to improve texture and prevent any eggy taste.
- Greek Yogurt – Keeps the muffins moist and tender while adding extra protein.
- Butter – Adds rich flavor. Use unsalted butter or ghee for the best results.
- Sweetener – Choose a keto-friendly sweetener such as monk fruit, erythritol, or allulose.
- Vanilla Extract – Use a high-quality vanilla extract for a stronger, richer flavor.
- Baking Powder – Helps the muffins rise and stay light and fluffy.
- Sugar-Free Chocolate Chips – Use your favorite unsweetened chocolate chips or chop up a bar of sugar-free dark chocolate.
How To Make Keto Vanilla Protein Muffins
Believe me, if you follow a few simple steps, you will enjoy the most delicious keto protein muffins. Here are the instructions that you have to follow:
Prepare the Muffin Tray
Line a muffin tray with silicone or paper muffin cups.
Make the Protein Muffin Batter
Add the eggs, yogurt, melted butter, and vanilla extract to a bowl and mix until well combined.
Then add the dry ingredients and whisk them until there are no lumps.
Fold in the chocolate chips using a silicone spatula
Distribute the batter between the muffin liners, and sprinkle with chocolate chips.
Baking the Muffins
Place the muffin tray in the preheated oven at 350F/180C and bake for 15-18 minutes until golden.
Remove the muffins from the oven when a toothpick inserted in the middle comes out almost clean.
Transfer them to a rack to cool before serving.
Tips for Making the Best Keto Vanilla Protein Muffins
- Don’t overmix the batter — Overmixing can make your muffins dense and dry instead of light and fluffy. Mix just until combined.
- Use room-temperature ingredients to help everything blend smoothly and improve texture.
- Sift dry ingredients like almond flour and protein powder to remove lumps and ensure an even batter.
- Avoid overbaking — Take the muffins out as soon as a toothpick inserted in the center comes out clean to keep them moist and tender.
Mix-in Variations for Keto Vanilla Protein Muffins
- Add fresh blueberries or raspberries for a burst of natural sweetness and extra antioxidants.
- Substitute the sugar-free chocolate chips with your favorite chopped nuts like pecans, almonds, or walnuts for added crunch and healthy fats.
- Top your muffins with a dollop of keto cream cheese frosting for a rich, creamy finish.
- Stir in shredded coconut to enhance texture and add a subtle tropical flavor.
- Incorporate shredded zucchini for extra moisture and a nutrient boost without altering the flavor.
- Mix in some chia seeds or flaxseeds for added fiber and omega-3 fatty acids.
- Try adding a teaspoon of cinnamon or nutmeg for a warm, comforting spice twist.
Storing Ideas
- Fridge: If you have leftovers, you can store them covered in an airtight container for up to 7 days.
- Freezer: These homemade muffins can also be stored in the freezer in an airtight container for up to 2 months.Thaw them overnight in the refrigerator or reheat them in the microwave for about 30 seconds.
Frequently Asked Questions
Can I Make These Muffins With Coconut Flour?
I don’t recommend replacing the almond flour with coconut flour since they have different properties, and the result will be different.
Can I Make These Muffins In Advance?
Sure, you can make them in advance and store them in the fridge to enjoy whenever you need a quick snack or are craving something sweet.
Are Protein Muffins Good For Us?
Protein muffins aren’t such a good thing for us if we are talking about recipes made with added sugar and other high in carbs ingredients.
But this recipe for keto protein vanilla muffins is good for us since they are made from naturally low-carb ingredients and no other artificial ingredients.
Keto Vanilla Protein Muffins
Description
Ingredients
- 4 eggs large, room temperature
- 1 cup Greek yogurt full-fat
- 1/2 cup butter melted
- 1 cup almond flour
- 2/3 cup vanilla protein powder
- 2/3 cup sweetener
- 1 tsp vanilla extract
- 1 1/2 tsp baking powder
- 1/2 cup chocolate chips unsweetened, or more to taste
Instructions
- Line a muffin tray with silicone or paper muffin cups and preheat your oven to 350 F/180 C.
- Add the eggs, yogurt, vanilla extract, and melted butter to a bowl and mix for 2 minutes until well combined.
- Then add the almond flour, protein powder, sweetener, and baking powder. Mix until there are no lumps.
- Then fold in the chocolate chips using a silicone spatula
- Distribute the batter between the muffin liners, and sprinkle with chocolate chips.
- Bake them for 15-18 minutes in the preheated oven.
- Remove the muffins from the oven and cool them on a cooling rack.
How do we calculate the nutrition info?
These nutrition facts listed are determined using nutrition information from the USDA Food Database. Our nutrition facts are accurate, but if you are using different products, please make your calculations. Net carb count is calculated by subtracting both fiber and sugar alcohols because they don’t raise blood sugar.